Workflow: siamcat.cwl
Fetched 2023-01-11 23:03:30 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| alpha | Float | ||
| cutoff | Float | ||
| log_n0 | Float | ||
| min_fc | Float | ||
| srcdir | String | ||
| feat_in | File | ||
| label_in | File | ||
| mult_test | String | ||
| plot_type | String | ||
| col_scheme | String | ||
| filt_method | String | ||
| metadata_in | File (Optional) | ||
| norm_global | Boolean | ||
| norm_method | String | ||
| norm_sample | Boolean | ||
| recomp_prop | Boolean | ||
| resample_cv | Integer | ||
| rm_unmapped | Boolean | ||
| stratify_cv | Boolean | ||
| stratify_ms | Boolean | ||
| vector_norm | Integer | ||
| detect_limit | Float | ||
| heatmap_type | String | ||
| ms_criterion | String | ||
| num_folds_cv | Integer | ||
| num_folds_ms | Integer | ||
| plot_metadata | Boolean | ||
| inseparable_cv | String | ||
| sd_min_quantile | Float | ||
| consens_threshold | Float | ||
| min_nonzero_coeff | Integer |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| SPLIT |
modules/split.cwl
(CommandLineTool)
|
||
| FILTER |
modules/filter.cwl
(CommandLineTool)
|
||
| EVALUATE |
modules/evaluate.cwl
(CommandLineTool)
|
||
| VALIDATE |
modules/validate.cwl
(CommandLineTool)
|
||
| INTERPRET |
modules/interpret.cwl
(CommandLineTool)
|
||
| NORMALIZE |
modules/normalize.cwl
(CommandLineTool)
|
||
| APPLYLASSO |
modules/applylasso.cwl
(CommandLineTool)
|
||
| CHECKASSOC |
modules/checkassoc.cwl
(CommandLineTool)
|
||
| TRAINLASSO |
modules/trainlasso.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| model_plots_out | File | ||
| evaluation_plots_out | File | ||
| association_plots_out | File | ||
| normalization_parameters_out | File |
Permalink:
https://w3id.org/cwl/view/git/164dd130f3a0b072f9e48f22c4bb7bfc4fe13ba3/siamcat.cwl
