Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph umi molecular alignment fastq workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/alignment_umi_molecular.cwl

Branch/Commit ID: low-vaf
workflow graph ProGENI

network-guided gene prioritization method implementation by KnowEnG that ranks gene measurements by their correlation to observed phenotypes

 https://github.com/KnowEnG/cwl-gene-prioritization.git

Path: gp_workflow.cwl

Branch/Commit ID: master
workflow graph gwas.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/gwas.cwl

Branch/Commit ID: main
workflow graph wf3.cwl

https://github.com/RenskeW/cwlprov-provenance.git

Path: sl_prov_question/scenario3/wf3.cwl

Branch/Commit ID: main
workflow graph standard_pipeline.cwl

This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/standard_pipeline.cwl

Branch/Commit ID: master
workflow graph diffbind-parallel.cwl

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/diffbind-parallel.cwl

Branch/Commit ID: master
workflow graph presto.cwl

https://github.com/EOSC-LOFAR/presto-cwl.git

Path: presto.cwl

Branch/Commit ID: master
workflow graph beagle-imputation-per-region.cwl

https://github.com/hacchy1983/imputation-server-jp.git

Path: Workflows/beagle-imputation-per-region.cwl

Branch/Commit ID: main
workflow graph TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/TransDecoder-v5-wf-2steps.cwl

Branch/Commit ID: cwlexec
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: 16dd8ca