Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exome alignment and germline variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: downsample_and_recall
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: master
workflow graph snaptools_create_snap_file.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/snaptools_create_snap_file.cwl

Branch/Commit ID: 302f1f3
workflow graph module-3.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/module-3.cwl

Branch/Commit ID: master
workflow graph Detect Variants workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/detect_variants.cwl

Branch/Commit ID: downsample_and_recall
workflow graph ST520113.cwl

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520113.cwl

Branch/Commit ID: main
workflow graph Bisulfite QC tools

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/bisulfite_qc.cwl

Branch/Commit ID: low-vaf
workflow graph pipeline_cavatica.cwl

https://github.com/lux563624348/WDL-HuBMAP-salmon-rnaseq.git

Path: pipeline_cavatica.cwl

Branch/Commit ID: main
workflow graph ST610106.cwl

https://github.com/Marco-Salvi/dtc61.git

Path: ST610106.cwl

Branch/Commit ID: remove-cycles
workflow graph 02-trim-pe.cwl

STARR-seq 02 trimming - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: master