Explore Workflows
View already parsed workflows here or click here to add your own
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cmsearch-multimodel.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: 56dafa4 |
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group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/Barski-lab/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: master |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 0cf06f1 |
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cgpRna_with_infuse.cwl
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https://github.com/cancerit/cgpRna.git
Path: cwls/cgpRna_with_infuse.cwl Branch/Commit ID: dev |
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standard_bam_to_collapsed_qc.cwl
This is a workflow to go from standard bams to collapsed bams and QC results. |
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/subworkflows/standard_bam_to_collapsed_qc.cwl Branch/Commit ID: master |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: test |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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https://github.com/hmenager/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: master |
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chksum_for_a_corrupted_fastq_file.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_for_a_corrupted_fastq_file.cwl Branch/Commit ID: master |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-04-features.cwl |
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CroMaSt.cwl
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https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git
Path: CroMaSt.cwl Branch/Commit ID: main |
