Explore Workflows
View already parsed workflows here or click here to add your own
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wf_get_peaks_trim_partial_scatter_se.cwl
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Path: cwl/wf_get_peaks_trim_partial_scatter_se.cwl Branch/Commit ID: master |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 3bb03c9b |
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Run genomic CMsearch (Rfam rRNA)
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Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: master |
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CNV_pipeline
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Path: structuralvariants/cwl/workflow.cwl Branch/Commit ID: 1.0.6 |
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gk-full-step-qeheat.cwl
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Path: cwl/gk-full-step-qeheat.cwl Branch/Commit ID: master |
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QIIME2 Step 2 (DADA2 option)
QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom |
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow Packed ID: main |
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ChIP-seq peak caller workflow MACS2 based
This workflow execute peak caller and QC for ChIP-seq using MACS2 |
Path: workflows/ChIP-Seq/peak-calling-MACS2-genome-size.cwl Branch/Commit ID: master |
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fusion_workflow.cwl
Fusion workflow, runs STARFusion and Arriba |
Path: fusion_workflow.cwl Branch/Commit ID: master |
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wf_demultiplex_se.cwl
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol) |
Path: cwl/wf_demultiplex_se.cwl Branch/Commit ID: master |
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nestedworkflows.cwl
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Path: src/_includes/cwl/workflows/nestedworkflows.cwl Branch/Commit ID: main |
