Explore Workflows
View already parsed workflows here or click here to add your own
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qiime2 identify differentially abundant features
Differential abundance testing with ANCOM from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-09-ancom.cwl |
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cram_to_bam workflow
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https://github.com/markrobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: workflow.cwl |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: e1b0fce |
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Varscan Workflow
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: master |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0 |
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functional analysis prediction with InterProScan
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: ca6ca61 |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 5dc7c5c |
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exome alignment with qc
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https://github.com/MarkRobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: main |
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ug-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/ug-distr.cwl Branch/Commit ID: master |
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vqsr-flow.cwl
run vqsr flow, including vqsr rcal, vqsr apply and plot |
https://github.com/sentieon/sentieon-cwl.git
Path: stage/vqsr-flow.cwl Branch/Commit ID: master |
