Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wf_clipseqcore_pe_1barcode.cwl
Workflow for handling reads containing one barcode. Returns the bam file containing read2 only. Notes: runs the following steps: - demultiplex - trimfirst_file2string - trimagain_file2string - b1_trim_and_map - view_r2 - index_r2_bam - make_bigwigs |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_clipseqcore_pe_1barcode.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 135976d |
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cmsearch-multimodel.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: 135976d |
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Unaligned to aligned BAM
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https://github.com/genome/cancer-genomics-workflow.git
Path: unaligned_bam_to_bqsr/align.cwl Branch/Commit ID: toil_compatibility |
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testDirLayout.cwl
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https://github.com/klimstef/testing-for-Haqseq.git
Path: cwl_s/testDirLayout.cwl Branch/Commit ID: master |
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Unaligned to aligned BAM
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: master |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: annotator_sub_wf.cwl Branch/Commit ID: master |
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pindel parallel workflow
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: master |
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count-lines16-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines16-wf.cwl Branch/Commit ID: main |
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WGS QC workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: qc/workflow_wgs.cwl Branch/Commit ID: toil_compatibility |
