Explore Workflows
View already parsed workflows here or click here to add your own
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 1.1.3 |
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pipeline_step4.cwl
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Path: pipeline_step4.cwl Branch/Commit ID: master |
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Quality assessment, amplicon classification and functional prediction
Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Picrust 2 - Export module for ngtax |
Path: cwl/workflows/workflow_ngtax_picrust2.cwl Branch/Commit ID: master |
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Detect Variants workflow
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Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: No_filters_detect_variants |
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Subworkflow for Annotation
\"Subworkflow for Metagenome Annotation This subworkflow is for annotation of predicted protein coding sequences. \" |
Path: Workflow/annotation_sw.cwl Branch/Commit ID: main |
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wf-variantcall.cwl
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Path: somatic/somatic-workflow/wf-variantcall.cwl Branch/Commit ID: master |
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contig construction and protein prediction
\"This workflow performs construction of metagenomic contigs and prediction protein sequences for metagenomic contigs. It executes 2 processes: contig construction and protein prediction. related CWL file: ./Tools/01_megahit.cwl ./Tools/02_rename.cwl ./Tools/03_seqkit_stats.cwl ./Tools/04_prodigal.cwl\" |
Path: Workflow/megahit_prodigal_sw.cwl Branch/Commit ID: main |
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collect_pair_files.cwl
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Path: modules/pair/collect_pair_files.cwl Branch/Commit ID: master |
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fortunecow.cwl
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Path: cwl/fortunecow.cwl Branch/Commit ID: main |
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genomics-workspace-transcript.cwl
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Path: flow_genomicsWorkspace/genomics-workspace-transcript.cwl Branch/Commit ID: master |
