Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph bwa_index

Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_index.cwl

Branch/Commit ID: 1.1.3
workflow graph pipeline_step4.cwl

https://github.com/Gibbsdavidl/CWL_scatter_example.git

Path: pipeline_step4.cwl

Branch/Commit ID: master
workflow graph Quality assessment, amplicon classification and functional prediction

Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Picrust 2 - Export module for ngtax

https://git.wur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_ngtax_picrust2.cwl

Branch/Commit ID: master
workflow graph Detect Variants workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/detect_variants.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph Subworkflow for Annotation

\"Subworkflow for Metagenome Annotation This subworkflow is for annotation of predicted protein coding sequences. \"

https://github.com/RyoMameda/workflow_cwl.git

Path: Workflow/annotation_sw.cwl

Branch/Commit ID: main
workflow graph wf-variantcall.cwl

https://github.com/bcbio/test_bcbio_cwl.git

Path: somatic/somatic-workflow/wf-variantcall.cwl

Branch/Commit ID: master
workflow graph contig construction and protein prediction

\"This workflow performs construction of metagenomic contigs and prediction protein sequences for metagenomic contigs. It executes 2 processes: contig construction and protein prediction. related CWL file: ./Tools/01_megahit.cwl ./Tools/02_rename.cwl ./Tools/03_seqkit_stats.cwl ./Tools/04_prodigal.cwl\"

https://github.com/RyoMameda/workflow_cwl.git

Path: Workflow/megahit_prodigal_sw.cwl

Branch/Commit ID: main
workflow graph collect_pair_files.cwl

https://github.com/mskcc/roslin-cwl.git

Path: modules/pair/collect_pair_files.cwl

Branch/Commit ID: master
workflow graph fortunecow.cwl

https://github.com/chgarth/cwl-openfoam.git

Path: cwl/fortunecow.cwl

Branch/Commit ID: main
workflow graph genomics-workspace-transcript.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_genomicsWorkspace/genomics-workspace-transcript.cwl

Branch/Commit ID: master