Workflow: exomeseq-gatk4-03-organizedirectories.cwl

Fetched 2021-07-28 11:10:23 GMT
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Workflow as SVG
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  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
raw_variants File[]
trim_reports d4650eb271da359daa6719784af8faea[]
bams_markduplicates File[]
bams_recalibrated File[]
fastqc_reports 5980f2030b10f4e789565bf00738549f[]

Steps

ID Runs Label Doc
org_raw_variants
../tools/files-to-directory.cwl (ExpressionTool)
Moves an array of Files into a named directory
org_bams_markduplicates
../tools/files-to-directory.cwl (ExpressionTool)
Moves an array of Files into a named directory
org_trim_reports
../tools/file-pairs-to-directory.cwl (ExpressionTool)
Moves an array of File pairs into a named directory
org_bams_recalibrated
../tools/files-to-directory.cwl (ExpressionTool)
Moves an array of Files into a named directory
org_fastqc_reports
../tools/file-pairs-to-directory.cwl (ExpressionTool)
Moves an array of File pairs into a named directory

Outputs

ID Type Label Doc
raw_variants_dir Directory
bams_markduplicates_dir Directory
bams_recalibrated_dir Directory
fastqc_reports_dir Directory
trim_reports_dir Directory
Permalink: https://w3id.org/cwl/view/git/e82f3a71183048dd6700ec6725ee526ac1a95238/subworkflows/exomeseq-gatk4-03-organizedirectories.cwl