Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph workflow.cwl

https://github.com/Andreja28/cloud-workflows.git

Path: cwl/baghdadite/deconv/workflow.cwl

Branch/Commit ID: master
workflow graph SetTelescopeEfficiency

Derive (or set) an overall efficiency parameter to the telescope throughput due to variations of the optical throughput. Allow for dependencies on off-axis angle and wavelength.

 https://github.com/gammasim/workflows.git

Path: workflows/SetTelescopeEfficiency.cwl

Branch/Commit ID: main
workflow graph umi duplex alignment workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/duplex_alignment.cwl

Branch/Commit ID: db0a91eb094d0a7c58042d4264986ea042dd4827
workflow graph PGAP Pipeline, simple user input, PGAPX-134

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: 8af4e2aabf43d5e3c7162efae4ad4649df5601e2
workflow graph qc-basic.workflow.cwl

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/qc-basic.workflow.cwl

Branch/Commit ID: master
workflow graph wf-jointcall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: giab-joint/giab-joint-workflow/wf-jointcall.cwl

Branch/Commit ID: master
workflow graph main-somatic.cwl

https://github.com/bcbio/test_bcbio_cwl.git

Path: somatic/somatic-workflow/main-somatic.cwl

Branch/Commit ID: 63ff76f114cac2cfdf8e93f9f03b735cbc082a73
workflow graph timelimit2-wf.cwl

The entire test should take ~24 seconds. Test that the 20 second time limit applies to each step individually (so 1st step has 20 seconds and the 2nd step has 20 seconds). So this 20 second time limit should not cause the workflow to fail. The timing on this test was updated from shorter values to accommodate the startup time of certain container runners, the previous timelimit of 5 seconds was too short, which is why it is now 20 seconds.

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/timelimit2-wf.cwl

Branch/Commit ID: main
workflow graph hisat2-stringtie_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/hisat2-stringtie/paired_end/hisat2-stringtie_wf_pe.cwl

Branch/Commit ID: master
workflow graph cnv_codex

CNV CODEX calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_codex.cwl

Branch/Commit ID: master