Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph rw-distr.cwl

run scatter-gather for rw stage

 https://github.com/sentieon/sentieon-cwl.git

Path: stage/rw-distr.cwl

Branch/Commit ID: master
workflow graph WGS QC workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: low-vaf
workflow graph umi molecular alignment workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/molecular_alignment.cwl

Branch/Commit ID: downsample_and_recall
workflow graph workflowSegmentTest.cwl

https://github.com/aplbrain/saber.git

Path: saber/i2g/examples/I2G_Seg_Workflow/workflowSegmentTest.cwl

Branch/Commit ID: master
workflow graph wgs alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_wgs.cwl

Branch/Commit ID: master
workflow graph mutect parallel workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/mutect.cwl

Branch/Commit ID: low-vaf
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: ada7831
workflow graph read_preprocessing.cwl

https://github.com/nigyta/rice_reseq.git

Path: workflows/read_preprocessing.cwl

Branch/Commit ID: master
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: downsample_and_recall
workflow graph io-int-default-tool-and-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/io-int-default-tool-and-wf.cwl

Branch/Commit ID: main