Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph wf_clipseqcore_pe_2barcodes.cwl

Workflow for handling reads containing two barcodes. Returns the bam file containing read2 only. Notes: runs the following steps: - demultiplex - trimfirst_file2string - trimagain_file2string - b1_trim_and_map - view_r2 - index_r2_bam - make_bigwigs

https://github.com/YeoLab/eclip.git

Path: cwl/wf_clipseqcore_pe_2barcodes.cwl

Branch/Commit ID: master
workflow graph manyjobs.cwl

https://github.com/fhembroff/wes-testing.git

Path: manyjobs/manyjobs.cwl

Branch/Commit ID: main
workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: c1f8b22
workflow graph VIRTUS.PE.cwl

https://github.com/yyoshiaki/VIRTUS.git

Path: workflow/VIRTUS.PE.cwl

Branch/Commit ID: master
workflow graph exomeseq.cwl#exomeseq-00-prepare-reference-data.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: exomeseq-00-prepare-reference-data.cwl
workflow graph minibam_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/david4096/oxog-dockstore-tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: develop
workflow graph main.cwl

https://github.com/smc-rna-challenge/beccyl-7238196.git

Path: main.cwl

Branch/Commit ID: master
workflow graph qiime2 create feature visual summaries

FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-04-features.cwl
workflow graph wf_workflow.cwl

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/workflow/wf_workflow.cwl

Branch/Commit ID: master
workflow graph germline-gpu-v4.2.0.cwl

https://github.com/NCGM-genome/WGSpipeline.git

Path: Workflows/germline-gpu-v4.2.0.cwl

Branch/Commit ID: main