Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
SSU-from-tablehits.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: f993cad |
|
|
|
RNA-Seq alignment and transcript/gene abundance workflow
|
https://github.com/genome/cancer-genomics-workflow.git
Path: rnaseq/workflow.cwl Branch/Commit ID: toil_compatibility |
|
|
|
QIIME2 Step 1
QIIME2 Import and Demux Step 1 |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step1-import-demux.cwl Branch/Commit ID: qiime2-workflow Packed ID: main |
|
|
|
varscan somatic workflow
|
https://github.com/hamid58b/cancer-genomics-workflow.git
Path: varscan/varscan.cwl Branch/Commit ID: master |
|
|
|
Per-chromosome pindel
|
https://github.com/hamid58b/cancer-genomics-workflow.git
Path: pindel/pindel_cat.cwl Branch/Commit ID: master |
|
|
|
checker-workflow-wrapping-workflow.cwl
This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/dockstore-testing/md5sum-checker.git
Path: checker-workflow-wrapping-workflow.cwl Branch/Commit ID: master |
|
|
|
04-peakcall-se.cwl
ATAC-seq 04 quantification - SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: v1.0 |
|
|
|
RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 9c57dba |
|
|
|
Exome QC workflow
|
https://github.com/mnneveau/cancer-genomics-workflow.git
Path: qc/workflow_exome.cwl Branch/Commit ID: master |
|
|
|
Runs InterProScan on batches of sequences to retrieve functional annotations.
|
https://github.com/hmenager/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: master |
