Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph extract_gencoll_ids

https://github.com/ncbi/pgap.git

Path: task_types/tt_extract_gencoll_ids.cwl

Branch/Commit ID: test
workflow graph First scatter to find seed orthologs, unite them, find annotations

https://github.com/kinow/pipeline-v5.git

Path: workflows/subworkflows/assembly/eggnog-subwf.cwl

Branch/Commit ID: eosc-life-gos
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: ada7831
workflow graph EMG assembly for paired end Illumina

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: 0cf06f1
workflow graph gatk-4.0.0.0-joint-calling.cwl

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/gatk-4.0.0.0-joint-calling.cwl

Branch/Commit ID: master
workflow graph bam-bedgraph-bigwig.cwl

https://github.com/barski-lab/ga4gh_challenge.git

Path: subworkflows/bam-bedgraph-bigwig.cwl

Branch/Commit ID: master
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: c1f8b22
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 0cf06f1
workflow graph realignment.cwl

https://github.com/mskcc/roslin-cwl.git

Path: modules/pair/realignment.cwl

Branch/Commit ID: master
workflow graph bam to trimmed fastqs and HISAT alignments

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: downsample_and_recall