Workflow: readme-genePrediction-workflow.cwl
Fetched 2024-11-25 10:55:28 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| tree | String[] | ||
| organization | String | ||
| original_gff | File | ||
| processed_gff | File (Optional) | ||
| url_cds_fasta | String[] | ||
| url_table_file | String[] | ||
| url_genomic_gff | String[] | ||
| url_protein_fasta | String[] | ||
| link_to_publication | String | ||
| url_transcript_fasta | String[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| writeInfo |
writeInfo-genePred.cwl
(CommandLineTool)
|
||
| writeURL-cds |
writeURL.cwl
(CommandLineTool)
|
||
| writeURL-gff |
writeURL.cwl
(CommandLineTool)
|
||
| create_readme |
create_readme.cwl
(CommandLineTool)
|
||
| writeFirstLine |
writeFirstLine.cwl
(CommandLineTool)
|
||
| writeLastLine_v1 |
writeLastLine-genePred.cwl
(CommandLineTool)
|
||
| writeLastLine_v2 |
writeLastLine-genePred_annotation.cwl
(CommandLineTool)
|
||
| writeURL-protein |
writeURL.cwl
(CommandLineTool)
|
||
| writeURL-transcript |
writeURL.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| readme_file | File |
Permalink:
https://w3id.org/cwl/view/git/556884e8e205295e561b1d9140d836cdd6c1d8c9/flow_create_readme/readme-genePrediction-workflow.cwl
