Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Varscan Workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/varscan_germline.cwl

Branch/Commit ID: low-vaf
workflow graph star-stringtie_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/star-stringtie/single_end/star-stringtie_wf_se.cwl

Branch/Commit ID: master
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: master
workflow graph exomeseq-gatk4-preprocessing/v2.2.0

Whole Exome Sequence preprocessing using GATK4 - v2.2.0

 https://github.com/bespin-workflows/exomeseq-gatk4.git

Path: exomeseq-gatk4-preprocessing.cwl

Branch/Commit ID: develop
workflow graph multimutants.cwl

https://github.com/CERIT-SC/fireprot.git

Path: multimutants.cwl

Branch/Commit ID: master
workflow graph genomel_cohort_genotyping.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/genomel_cohort_genotyping.cwl

Branch/Commit ID: master
workflow graph validate_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/validate_interleaved_fq.cwl

Branch/Commit ID: 0.2.3
workflow graph amplicon-2.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/conditionals/amplicon/amplicon-2.cwl

Branch/Commit ID: master
workflow graph 00_qsm_pipeline_v1.cwl

https://github.com/MGuevaraO/qsm_pipeline.git

Path: 00_qsm_pipeline_v1.cwl

Branch/Commit ID: main
workflow graph Bisulfite QC tools

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/bisulfite_qc.cwl

Branch/Commit ID: downsample_and_recall