Workflow: Filter Protein Seeds; Find ProSplign Alignments
Fetched 2026-06-06 20:42:48 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/dev/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| asn_cache | Directory | ||
| seed_hits | File | ||
| gc_assembly | File | ||
| uniColl_asn_cache | Directory |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| Find_ProSplign_Alignments_gpx_qdump |
gpx_qdump_pro.cwl
(CommandLineTool)
|
Find ProSplign Alignments, gather | |
| Find_ProSplign_Alignments_gpx_qsubmit |
gpx_qsubmit_pro.cwl
(CommandLineTool)
|
Find ProSplign Alignments, scatter | |
| Filter_Protein_Seeds_prosplign_compart |
prosplign_compart.cwl
(CommandLineTool)
|
Filter Protein Seeds, compart | |
| Find_ProSplign_Alignments_prosplign_wnode |
prosplign_wnode.cwl
(CommandLineTool)
|
Seed Search Compartments, execute\" | |
| Filter_Protein_Seeds_prosplign_compart_filter |
prosplign_compart_filter.cwl
(CommandLineTool)
|
Filter Protein Seeds, compart filter |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| prosplign_align | File |
Permalink:
https://w3id.org/cwl/view/git/2a81fcde75ca7665814c8de2210c7bc3121a08a3/protein_alignment/wf_compart_filter_prosplign.cwl
