Explore Workflows

Calculates the rescue ratio (see Gabe's protocols paper), given two eCLIP IP samples and 2 size-matched input samples. Also returns the reproducible peaks given these two samples. This is different from the 1input workflow in that each INPUT is first merged together and is used downstream instead of the 1input version, which remains unmodified. Merged inputs are NOT used in calculating true reproducible peaks.

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_rescue_ratio_2inputs.cwl

Branch/Commit ID: master

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/align_and_count.cwl

Branch/Commit ID: main

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/germline_filter_vcf.cwl

Branch/Commit ID: low-vaf

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: panel_of_normals/workflow.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/sum-wf.cwl

Branch/Commit ID: main

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines12-wf.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 2104dc3

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/workflow_inputs.cwl

Branch/Commit ID: main

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: fa86fce

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/pvacseq.cwl

Branch/Commit ID: low-vaf