Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/azimuth-annotate.git

Path: pipeline.cwl

Branch/Commit ID: a5b2aa9

workflow graph lobSTR-workflow.cwl

https://github.com/common-workflow-library/legacy.git

Path: workflows/lobSTR/lobSTR-workflow.cwl

Branch/Commit ID: master

workflow graph output_reference_workflow_input.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/output_reference_workflow_input.cwl

Branch/Commit ID: main

workflow graph cond-wf-006.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-006.cwl

Branch/Commit ID: main

workflow graph read_preprocessing.cwl

https://github.com/nigyta/rice_reseq.git

Path: workflows/read_preprocessing.cwl

Branch/Commit ID: master

workflow graph canine_collect_somatic_metrics_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_collect_somatic_metrics_module.cwl

Branch/Commit ID: master

workflow graph 03-map-se-blacklist-removal.cwl

ATAC-seq 03 mapping - reads: SE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl

Branch/Commit ID: v1.0

workflow graph BAM to BEDPE

Comvert BAM to BEDPE and compress the output

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/bamtobedpe-gzip.cwl

Branch/Commit ID: master

workflow graph cond-wf-010.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-010.cwl

Branch/Commit ID: main

workflow graph NonSpliced RNAseq workflow

Workflow for NonSpliced RNAseq data alignment with multiple aligners. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (trimming) - bowtie2 (read mapping) - sam_to_sorted-bam - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts)

https://git.wur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_RNAseq_NonSpliced.cwl

Branch/Commit ID: master