Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph strelka workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_and_post_processing.cwl

Branch/Commit ID: master
workflow graph qiime2 DADA2 detect/correct paired sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-03-dada2-paired.cwl

Branch/Commit ID: develop
workflow graph gk-store-xvs.cwl

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-store-xvs.cwl

Branch/Commit ID: master
workflow graph atac_encode_sample.cwl

https://github.com/ngs-mstb/micgent.git

Path: python/lib/MICGENT/data/cwl/atac_encode_sample.cwl

Branch/Commit ID: master
workflow graph fusion_workflow.cwl

Fusion workflow, runs STARFusion and Arriba

 https://github.com/bd2kgenomics/dockstore_workflow_fusion.git

Path: fusion_workflow.cwl

Branch/Commit ID: 1.0.0
workflow graph wrapped_workflow_example_workflow.cwl

https://github.com/Aeolic/example-workflow.git

Path: wrapped_workflow_example_workflow.cwl

Branch/Commit ID: main
workflow graph retrieve sequence and perform pairwise alignment (sub-workflow process)

\"Perform pairwise alignment of protein sequences for pairs identified by structural similarity search. Step 1: retrieve sequence from blastdbcmd result Step 2: makeblastdb: ../Tools/14_makeblastdb.cwl Step 3: blastdbcmd: ../Tools/15_blastdbcmd.cwl Step 4: seqretsplit: ../Tools/16_seqretsplit.cwl Step 5: needle (Global alignment): ../Tools/17_needle.cwl Step 6: water (Local alignment): ../Tools/17_water.cwl\"

https://github.com/yonesora56/plant2human.git

Path: Workflow/11_retrieve_sequence_wf.cwl

Branch/Commit ID: main
workflow graph kf-cram2gvcf_calc_contam.cwl

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/kf-cram2gvcf_calc_contam.cwl

Branch/Commit ID: dev
workflow graph Alignment without BQSR

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/sequence_to_bqsr_nonhuman.cwl

Branch/Commit ID: low-vaf
workflow graph bgzip and index VCF

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/bgzip_and_index.cwl

Branch/Commit ID: No_filters_detect_variants