Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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pipeline.cwl
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https://github.com/hubmapconsortium/azimuth-annotate.git
Path: pipeline.cwl Branch/Commit ID: a5b2aa9 |
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lobSTR-workflow.cwl
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https://github.com/common-workflow-library/legacy.git
Path: workflows/lobSTR/lobSTR-workflow.cwl Branch/Commit ID: master |
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output_reference_workflow_input.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/output_reference_workflow_input.cwl Branch/Commit ID: main |
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cond-wf-006.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-wf-006.cwl Branch/Commit ID: main |
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read_preprocessing.cwl
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https://github.com/nigyta/rice_reseq.git
Path: workflows/read_preprocessing.cwl Branch/Commit ID: master |
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canine_collect_somatic_metrics_module.cwl
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https://github.com/d3b-center/canine-dev.git
Path: subworkflows/canine_collect_somatic_metrics_module.cwl Branch/Commit ID: master |
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03-map-se-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl Branch/Commit ID: v1.0 |
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BAM to BEDPE
Comvert BAM to BEDPE and compress the output |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/bamtobedpe-gzip.cwl Branch/Commit ID: master |
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cond-wf-010.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-wf-010.cwl Branch/Commit ID: main |
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NonSpliced RNAseq workflow
Workflow for NonSpliced RNAseq data alignment with multiple aligners. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (trimming) - bowtie2 (read mapping) - sam_to_sorted-bam - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_RNAseq_NonSpliced.cwl Branch/Commit ID: master |
