- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ngs-mstb/micgent/master/COPYING
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
home | String | ||
config | File | ||
sample | https://w3id.org/cwl/view/git/f618ae02c567a8c6585680a0ce4e05f2afb978e7/python/lib/MICGENT/data/cwl/replicated_reads.yaml#sample_replicated_reads | ||
threads | Integer (Optional) | ||
bds_home | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
atac_encode |
atac_encode.cwl
(CommandLineTool)
|
atac_encode | |
cat_files1_1 |
cat_files.cwl
(CommandLineTool)
|
Concatenate several files together. This currently uses Unix `cat` utility, and should work correctly on gzip files. |
|
cat_files1_2 |
cat_files.cwl
(CommandLineTool)
|
Concatenate several files together. This currently uses Unix `cat` utility, and should work correctly on gzip files. |
|
cat_files2_1 |
cat_files.cwl
(CommandLineTool)
|
Concatenate several files together. This currently uses Unix `cat` utility, and should work correctly on gzip files. |
|
cat_files2_2 |
cat_files.cwl
(CommandLineTool)
|
Concatenate several files together. This currently uses Unix `cat` utility, and should work correctly on gzip files. |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
SampleID | String | ||
out_json | File | ||
out_archive | File |
Permalink:
https://w3id.org/cwl/view/git/f618ae02c567a8c6585680a0ce4e05f2afb978e7/python/lib/MICGENT/data/cwl/atac_encode_sample.cwl