Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph prefetch_fastq.cwl

Worfklow combining an SRA fetch from NCBI with a fastq-dump cmd

https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git

Path: bio-cwl-tools/sratoolkit/prefetch_fastq.cwl

Branch/Commit ID: preprocessing
workflow graph wf_wrapper_paleocar.cwl

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/wrapper_paleocar/wf_wrapper_paleocar.cwl

Branch/Commit ID: master
workflow graph EMG pipeline v3.0 (paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: a8abd0e
workflow graph downsample unaligned BAM and align

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/downsample_workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph trnascan_wnode and gpx_qdump combined

https://github.com/ncbi/pgap.git

Path: bacterial_trna/wf_scan_and_dump.cwl

Branch/Commit ID: dev
workflow graph workflow-phmmer-blast.cwl

https://github.com/ebi-jdispatcher/webservice-cwl.git

Path: workflows/workflow-phmmer-blast.cwl

Branch/Commit ID: master
workflow graph alignment_workflow.cwl

https://github.com/DataBiosphere/topmed-workflows.git

Path: aligner/topmed-cwl/workflow/alignment_workflow.cwl

Branch/Commit ID: develop
workflow graph simple_magicblast.cwl

https://github.com/NCBI-Hackathons/BLAST-Pipelines-and-FAIR.git

Path: blast-pipelines/simple_magicblast.cwl

Branch/Commit ID: master
workflow graph Single-cell Multiome ATAC and RNA-Seq Alignment

Single-cell Multiome ATAC and RNA-Seq Alignment Runs Cell Ranger ARC Count to quantifies chromatin accessibility and gene expression from a single-cell Multiome ATAC and RNA-Seq library

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-multiome-align-wf.cwl

Branch/Commit ID: main
workflow graph scatter-valuefrom-wf1.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-valuefrom-wf1.cwl

Branch/Commit ID: main