Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 03-map-pe-blacklist-removal.cwl

ATAC-seq 03 mapping - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-pe-blacklist-removal.cwl

Branch/Commit ID: v1.0.0
workflow graph count-lines15-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines15-wf.cwl

Branch/Commit ID: main
workflow graph EMG pipeline v3.0 (paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: ca6ca61
workflow graph Sounder SIPS L1A PGE

Processes Sounder SIPS L0 products into L1A products

 https://github.com/unity-sds/unity-sps-workflows.git

Path: sounder_sips/l1a_package.cwl

Branch/Commit ID: main

Packed ID: main
workflow graph grep-and-count.cwl

https://github.com/yonesora56/togotv_cwl_for_remote_container.git

Path: zatsu_cwl/grep-and-count.cwl

Branch/Commit ID: master
workflow graph regtools workflow

https://github.com/griffithlab/regtools-cwl.git

Path: regtools/workflow.cwl

Branch/Commit ID: master
workflow graph adapter for sequence_align_and_tag

Some workflow engines won't stage files in our nested structure, so parse it out here

 https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: master
workflow graph Compute average of average per cross-mapped famil(y)ies

Compute average structure for all averaged structures corresponding to UniProt domain instances cross-mapped from Pfam/CATH to a CATH/Pfam family. First computes average per UniProt domain instance and then average all averaged structures per Pfam family.

https://github.com/HrishiDhondge/CroMaSt.git

Path: Tools/other_avg_subwf.cwl

Branch/Commit ID: main
workflow graph wf-variantcall.cwl

https://github.com/farahzkhan/bcbio_test_cwl.git

Path: somatic/somatic-workflow/wf-variantcall.cwl

Branch/Commit ID: master
workflow graph Workflow that executes the SBG L1 Workflow

https://github.com/unity-sds/sbg-workflows.git

Path: L1-to-L2-e2e.cwl

Branch/Commit ID: 1.1.1