Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Gathered Downsample and HaplotypeCaller
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/gathered_downsample_and_recall.cwl Branch/Commit ID: low-vaf |
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count-lines7-wf_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/count-lines7-wf_v1_0.cwl Branch/Commit ID: 4a8390d897913c3776a0d2b2a01e1e6134b968bc |
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umi molecular alignment workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: downsample_and_recall |
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pindel parallel workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: low-vaf |
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stdout-wf_v1_2.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/stdout-wf_v1_2.cwl Branch/Commit ID: 4a8390d897913c3776a0d2b2a01e1e6134b968bc |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: develop |
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gather AML trio outputs
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/aml_trio_cle_gathered.cwl Branch/Commit ID: downsample_and_recall |
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EMG assembly for paired end Illumina
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: master |
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packed.cwl#workflow_mc.cwl
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https://github.com/mr-c/cwltests.git
Path: cwl/packed.cwl Branch/Commit ID: pack_test Packed ID: workflow_mc.cwl |
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CNV_pipeline
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/workflow.cwl Branch/Commit ID: master |
