Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph workflow.cwl

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: flow_dispatch/2working_files/workflow.cwl

Branch/Commit ID: 556884e8e205295e561b1d9140d836cdd6c1d8c9
workflow graph germline-gpu.cwl

https://github.com/mr-c/WGSpipeline.git

Path: Workflows/germline-gpu.cwl

Branch/Commit ID: c47b05b265d27219a543dd8163eb87cb14938551
workflow graph macro-cwl

Main stage manager

 https://github.com/fabricebrito/fgb.git

Path: wrapped.cwl

Branch/Commit ID: 08b3e734aadaca3454f3b1225ad3ab76bc10e56a

Packed ID: main
workflow graph echo-wc_inline.cwl

Counts words of a message via echo and wc

 https://github.com/NLeSC/scriptcwl.git

Path: tests/data/workflows/echo-wc_inline.cwl

Branch/Commit ID: d2dcfa0686eaa893dd4b3efbd232e9bd1e15194d
workflow graph Detect Variants workflow for WGS pipeline

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/detect_variants_wgs.cwl

Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e
workflow graph protein annotation

Proteins - predict, cluster, identify, annotate

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/protein-annotation.workflow.cwl

Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6
workflow graph preprocess fasta

Remove reads from fasta files based on sequence stats. Return fasta files with reads passed and reads removed.

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/preprocess-fasta.workflow.cwl

Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6
workflow graph PGAP Pipeline, simple user input, PGAPX-134

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5
workflow graph assemble.cwl

Assemble a set of reads using SKESA

https://github.com/ncbi/pgap.git

Path: assemble.cwl

Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5
workflow graph metabarcode (gene amplicon) analysis for fastq files

protein - qc, preprocess, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/metabarcode-fastq.workflow.cwl

Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6