Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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TOPMed Alignment
A CWL wrapper of the TopMed alignment workflow described here: https://github.com/statgen/docker-alignment Tool Author: Hyun Min Kang (hmkang@umich.edu) and Adrian Tan (atks@umich.edu) Wrapper Author: Marko Zecevic (marko.zecevic@sbgenomics.com) |
https://github.com/stain/topmed-workflows.git
Path: aligner/sbg-alignment-cwl/topmed-alignment.cwl Branch/Commit ID: no-id |
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workflow1_11.cwl#VDJ_GatherCalls.cwl
VDJ_GatherCalls collect the outputs from the multi-processed VDJ step into one file. |
https://github.com/GeorgeAlehandro/cwl_1_11.git
Path: workflow1_11.cwl Branch/Commit ID: main Packed ID: VDJ_GatherCalls.cwl |
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scatter-valuefrom-wf1.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/scatter-valuefrom-wf1.cwl Branch/Commit ID: main |
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bacterial_orthology_cond
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology_conditional.cwl Branch/Commit ID: test |
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align-dir-pack.cwl#align-texts-wf.cwl
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/align-dir-pack.cwl Branch/Commit ID: master Packed ID: align-texts-wf.cwl |
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align-test-files-pack.cwl#align-texts-wf.cwl
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/align-test-files-pack.cwl Branch/Commit ID: master Packed ID: align-texts-wf.cwl |
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cram_to_bam workflow
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https://github.com/genome/analysis-workflows.git
Path: cram_to_bam/workflow.cwl Branch/Commit ID: toil_compatibility |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: pipeline.cwl Branch/Commit ID: a33bc8a |
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bacterial_orthology
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: test |
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snpeff-workflow.cwl
Annotate variants provided in a gziped VCF using SnpEff |
https://github.com/andrewjesaitis/cwl-tutorial.git
Path: snpeff-workflow.cwl Branch/Commit ID: master |
