Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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02-trim-pe.cwl
ChIP-seq 02 trimming - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: 21b15e76119981cb564bc3927456ffc6c473015f |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65 |
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exome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome_mouse.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479 |
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05-quantification.cwl
ChIP-seq - Quantification - samples: treatment |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/05-quantification.cwl Branch/Commit ID: 21b15e76119981cb564bc3927456ffc6c473015f |
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fastqtosam_se.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/fastqtosam/fastqtosam_se.cwl Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52 |
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Align reference proteins plane complete workflow
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_protein_alignment.cwl Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65 |
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pcr-bottleneck-coef.cwl
ChIP-seq - map - PCR Bottleneck Coefficients |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/map/pcr-bottleneck-coef.cwl Branch/Commit ID: 21b15e76119981cb564bc3927456ffc6c473015f |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/2other_species/workflow.cwl Branch/Commit ID: 7bfe5f8bcb70aab6d971417e72672703f2e623e5 |
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kf_alignment_fq_input_wf.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: workflows/kf_alignment_fq_input_wf.cwl Branch/Commit ID: 447af574ee9985d205e08d9cc9c182246802095d |
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Unaligned BAM to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479 |