Explore Workflows
View already parsed workflows here or click here to add your own
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Spliced RNAseq workflow
Workflow for Spliced RNAseq data Steps: - workflow_illumina_quality: - FastQC (Read Quality Control) - fastp (Read Trimming) - STAR (Read mapping) - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_RNAseq_Spliced.cwl Branch/Commit ID: master |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: 1550b3e |
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Whole genome alignment and somatic variant detection
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: downsample_and_recall |
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ST610109.cwl
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https://github.com/Marco-Salvi/dtc61.git
Path: ST610109.cwl Branch/Commit ID: manuela |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 71d9c83 |
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wgs_variant_calling_bam.cwl
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https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/wgs_variant_calling_bam.cwl Branch/Commit ID: dev |
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bulk_process.cwl
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: sc-atac-seq-pipeline/steps/bulk_process.cwl Branch/Commit ID: a33bc8a |
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module-4.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/module-4.cwl Branch/Commit ID: master |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: salmon-rnaseq/steps/salmon-quantification.cwl Branch/Commit ID: 14985c9 |
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basename-fields-test.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/basename-fields-test.cwl Branch/Commit ID: master |
