Workflow: Run genomic CMsearch (Rfam rRNA)

Fetched 2024-12-04 09:07:22 GMT
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Inputs

ID Type Title Doc
go Boolean[]
seqids File
taxon_db File
asn_cache Directory
model_path File
rfam_stockholm File
rfam_amendments File

Steps

ID Runs Label Doc
Run_genomic_CMsearch_Rfam_rRNA_wnode
cmsearch_wnode.cwl (CommandLineTool)
Run genomic CMsearch (Rfam rRNA), execution
Run_genomic_CMsearch_Rfam_rRNA_submit
gpx_qsubmit.cwl (CommandLineTool)
Run genomic CMsearch (Rfam rRNA), scatter
Post_process_CMsearch_Rfam_annotations
annot_merge.cwl (CommandLineTool)
Post-process CMsearch annotations
Run_genomic_CMsearch_Rfam_rRNA_Run_genomic_CMsearch_Rfam_rRNA_dump
gpx_qdump.cwl (CommandLineTool)
Run genomic CMsearch (Rfam rRNA), gather

Outputs

ID Type Label Doc
annots File
Permalink: https://w3id.org/cwl/view/git/424a01693259a75641dc249d553235aa38a6ce23/bacterial_ncrna/wf_gcmsearch.cwl