Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0 |
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wf-alignment.cwl
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https://github.com/bcbio/test_bcbio_cwl.git
Path: somatic/somatic-workflow/wf-alignment.cwl Branch/Commit ID: master |
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cmsearch-multimodel.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: fa86fce |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 16dd8ca |
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workflowSegmentTest.cwl
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https://github.com/aplbrain/saber.git
Path: saber/i2g/examples/I2G_Seg_Workflow/workflowSegmentTest.cwl Branch/Commit ID: master |
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consensus_bed.cwl
Workflow to merge a large number of maf files into a single consensus bed file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/consensus_bed.cwl Branch/Commit ID: master |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: d4e5e53 |
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workflow_i2g.cwl
local |
https://github.com/aplbrain/saber.git
Path: demos/em_pipelines/workflow_i2g.cwl Branch/Commit ID: master |
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bams2gvcf.woBQSR_female.multisamples.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_female.multisamples.cwl Branch/Commit ID: master |
