Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	js-expr-req-wf.cwl#wf	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/js-expr-req-wf.cwl Branch/Commit ID: 7bfe73a708dbf31d037303bb5a8fed1a79984b0f Packed ID: wf
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: a3e26136043c03192c38c335316d2d36e3e67478
	AltAnalyze ICGS AltAnalyze ICGS ===============	https://github.com/datirium/workflows.git Path: workflows/altanalyze-icgs.cwl Branch/Commit ID: ebbf23764ede324cabc064bd50647c1f643726fa
	readme-assembly-workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_create_readme/readme-assembly-workflow.cwl Branch/Commit ID: 243ba78438c6e9dfa3dfbfd6751124c978dd1c25
	AltAnalyze CellHarmony AltAnalyze CellHarmony ======================	https://github.com/datirium/workflows.git Path: workflows/altanalyze-cellharmony.cwl Branch/Commit ID: cbefc215d8286447620664fb47076ba5d81aa47f
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	Chunked version of phmmer-v3.2.cwl	https://github.com/mscheremetjew/workflow-is-cwl.git Path: workflows/phmmer-v3.2-chunked-wf.cwl Branch/Commit ID: 11cba46ea263315d4d66e86819718fa157e927b1
	Complete Mapping pipeline for Paired-end data A workflow which: i) Runs Hisat2 on each fastq pair while generating the fastq files containing unmapped reads ii) Runs Bowtie2 using the --very-sensitive-local option, on the unmapped reads iii) A subworkflow is employed to prepare BAM files, corresponding to the unmapped-remaped reads, to be merged with the mapped reads form Hisat2 iv) After the merged BAMs are created, they are sorted and assigned a user defined name (sample identifier) v) Corresponding index file for each sample is generated.	https://github.com/mr-c/elixir-gr-project.git Path: CWL/workflows/mapping-pe.cwl Branch/Commit ID: 6a1a6b9d5a152e783fe3f794ccce35387d02fd0d
	Tumor-Only Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: a3e26136043c03192c38c335316d2d36e3e67478