Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	qiime2 create feature visual summaries FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/	https://github.com/Duke-GCB/bespin-cwl.git Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-04-features.cwl
	create_snap_and_analyze.cwl	https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git Path: create_snap_and_analyze.cwl Branch/Commit ID: 44dbe38
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: master
	validate_interleaved_fq.cwl	https://github.com/cancerit/workflow-seq-import.git Path: cwls/validate_interleaved_fq.cwl Branch/Commit ID: 0.4.1
	mergeAndMarkBams_4_1_3.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/mergeAndMarkBams_4_1_3.cwl Branch/Commit ID: master
	rRNA_selection.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/rRNA_selection.cwl Branch/Commit ID: 0746e12
	gpas_purecn_tumor_only_filtration.cwl	https://github.com/NCI-GDC/gdc_tosvc_workflow.git Path: gdc-purecn-tumor-only-filtration-cwl/gpas_purecn_tumor_only_filtration.cwl Branch/Commit ID: master
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: master
	wgs alignment and germline variant detection	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: downsample_and_recall
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: master

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