Explore Workflows

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: No_filters_detect_variants

DNAseq pipeline from bam to vcf in distributed mode

https://github.com/Sentieon/Sentieon-cwl.git

Path: pipeline/pipeline-bam2vcf-distr.cwl

Branch/Commit ID: master

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: 3f85843

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-wf3.cwl

Branch/Commit ID: main

Packed ID: main

https://github.com/ncbi/pgap.git

Path: vecscreen/bacterial_screening.cwl

Branch/Commit ID: master

https://github.com/eosc-lofar/presto-cwl.git

Path: presto_nosort.cwl

Branch/Commit ID: visualise

This workflow aligns the fastq files using STAR for paired-end samples to be used in circRNA pipeline

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-circRNA.cwl

Branch/Commit ID: master

This workflow step executes TMT-Integrator using the report tables generated by Philosopher. The program applies a series of statistical filters, and high-quality thresholds to filter the data. Summary report tables are created containing peptides, proteins, genes, and phosphosites (only for phospho-enriched data sets).

https://github.com/cwl-apps/fragpipe-proteomics-pipeline-tutorial.git

Path: FragPipe-TMT-Integrator-and-QC/fragpipe-tmt-integrator-and-qc.cwl

Branch/Commit ID: main

https://github.com/ddbj/human-reseq.git

Path: Workflows/fastqSE2bam.cwl

Branch/Commit ID: master

https://github.com/genome/cancer-genomics-workflow.git

Path: wgs_workflow.cwl

Branch/Commit ID: toil_compatibility