Explore Workflows

Non-linear combination of KnowEnG tools

https://github.com/KnowEnG-Research/cwl-specification.git

Path: code/workflow.cwl

Branch/Commit ID: master

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/assembly/deal_with_functional_annotation.cwl

Branch/Commit ID: master

This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/DataBiosphere/toolbox.git

Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl

Branch/Commit ID: 1.30.0

run 3-pass dedup: algo LocusCollector + algo Dedup output_dup_read_name + algo Dedup dedup_by_read_name sequentially in distributed mode

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/dedup-3-pass-distr.cwl

Branch/Commit ID: master

\"This workflow performs rRNA annotation processing for multiple index files using scatter. It executes 4 processes: makeblastdb, blastn alignment, filtering, and rRNA removal for each rRNA index file. related CWL file: ./Tools/09_makeblastdb_rRNA.cwl ./Tools/10_blastn_rRNA_alignment.cwl ./Tools/10_blastn_rRNA_filter1.cwl ./Tools/10_blastn_rRNA_filter2.cwl ./Tools/10_blastn_rRNA_filter3.cwl\"

https://github.com/RyoMameda/workflow_cwl.git

Path: Workflow/blastn_rRNA_ssw.cwl

Branch/Commit ID: main

https://github.com/ska-sa/den.git

Path: cwl/main.cwl

Branch/Commit ID: master

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: a8abd0e

https://github.com/pvanheus/cwltutorial.git

Path: revcomp/revcomp.cwl

Branch/Commit ID: master

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/conditionals/amplicon/amplicon-2.cwl

Branch/Commit ID: master