Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bgzip and index VCF
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: varscan/bgzip_and_index.cwl Branch/Commit ID: master |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 5833078 |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: master |
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Find reads with predicted coding sequences above 60 AA in length
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/orf_prediction.cwl Branch/Commit ID: d4e5e53 |
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mutect parallel workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: low-vaf |
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facets-suite-workflow.cwl
Workflow for running the facets suite workflow on a single tumor normal pair Includes handling of errors in case execution fails for the sample pair |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/facets-suite-workflow.cwl Branch/Commit ID: master |
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workflow.cwl
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https://github.com/tom-tan/cwl-poc.git
Path: workflow.cwl Branch/Commit ID: master |
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Spliced RNAseq workflow
Workflow for Spliced RNAseq data Steps: - workflow_illumina_quality: - FastQC (Read Quality Control) - fastp (Read Trimming) - STAR (Read mapping) - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_RNAseq_Spliced.cwl Branch/Commit ID: master |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 8515542 |
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scatter-workflow.cwl
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https://github.com/BiodataAnalysisGroup/intro-to-cwl-docker.git
Path: _includes/cwl/scatter-workflow.cwl Branch/Commit ID: gh-pages |
