Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	stdout-wf_v1_2.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/stdout-wf_v1_2.cwl Branch/Commit ID: 5759b4275906e6cfe13912c8426de2a2237cb4b0
	trim-rnaseq-se.cwl Runs RNA-Seq BioWardrobe basic analysis with single-end data file.	https://github.com/Barski-lab/workflows.git Path: workflows/trim-rnaseq-se.cwl Branch/Commit ID: de847468843203ce92b6d19323c5fe77dc488e34
	Cell Ranger Count Gene Expression Cell Ranger Count Gene Expression Quantifies gene expression from a single-cell RNA-Seq library.	https://github.com/datirium/workflows.git Path: workflows/single-cell-preprocess-cellranger.cwl Branch/Commit ID: 7030da528559c7106d156284e50ff0ecedab0c4e
	Cell Ranger Build Reference Indices Cell Ranger Build Reference Indices ===================================	https://github.com/datirium/workflows.git Path: workflows/cellranger-mkref.cwl Branch/Commit ID: ebbf23764ede324cabc064bd50647c1f643726fa
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: a3e26136043c03192c38c335316d2d36e3e67478
	exome alignment and germline variant detection	https://github.com/genome/cancer-genomics-workflow.git Path: germline_exome_workflow.cwl Branch/Commit ID: bc4a0f74082ffcf099977a1efac830d7e100bd66
	SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.	https://github.com/Barski-lab/workflows.git Path: tools/soupx-subworkflow.cwl Branch/Commit ID: de847468843203ce92b6d19323c5fe77dc488e34
	step_valuefrom5_wf_v1_0.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/step_valuefrom5_wf_v1_0.cwl Branch/Commit ID: 5759b4275906e6cfe13912c8426de2a2237cb4b0
	ValidateCameraChargeResponse Validate camera charge response.	https://github.com/gammasim/workflows.git Path: workflows/ValidateCameraChargeResponse.cwl Branch/Commit ID: bf4d4a44a543bcc04f4508ce020751c71550acf5