Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph bulk_process.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/bulk_process.cwl

Branch/Commit ID: 302f1f3
workflow graph checker_workflow_wrapping_tool.cwl

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git

Path: checker_workflow_wrapping_tool.cwl

Branch/Commit ID: 1.3.0
workflow graph count-lines13-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines13-wf.cwl

Branch/Commit ID: main
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: downsample_and_recall
workflow graph Transcripts annotation workflow

https://github.com/hmenager/workflow-is-cwl.git

Path: workflows/TranscriptsAnnotation-i5only-wf.cwl

Branch/Commit ID: master
workflow graph create_diploid_genome.cwl

Diploid Genome Creation Workflow

 https://github.com/Sage-Bionetworks/rnaseqSim.git

Path: workflow/create_diploid_genome.cwl

Branch/Commit ID: master
workflow graph chksum_xam_to_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_xam_to_interleaved_fq.cwl

Branch/Commit ID: develop
workflow graph Identifies non-coding RNAs using Rfams covariance models

https://github.com/EBI-Metagenomics/workflow-is-cwl.git

Path: workflows/cmsearch-multimodel-wf.cwl

Branch/Commit ID: assembly
workflow graph sum-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/sum-wf.cwl

Branch/Commit ID: main
workflow graph final_chunking.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/final_chunking.cwl

Branch/Commit ID: master