Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Per-region pindel
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: master |
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wf_C3_C4_map_present_NA.cwl
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https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/yw2cwl_parser/example_sql/C3_C4_map_present_NA/wf_C3_C4_map_present_NA.cwl Branch/Commit ID: master |
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add_sqrt_workflow.cwl
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https://github.com/srp33/ToolJig.git
Path: examples/workflows/math/add_sqrt_workflow.cwl Branch/Commit ID: master |
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wf-variantcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: wes-agha-test/wes_chr21_test-workflow-arvados/wf-variantcall.cwl Branch/Commit ID: master |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-04-features.cwl Branch/Commit ID: develop |
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Tumor-Only Detect Variants workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: detect_variants/tumor_only_detect_variants.cwl Branch/Commit ID: toil_compatibility |
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hello-workflow.cwl
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https://github.com/inab/hello-workflows.git
Path: cwl/hello-workflow.cwl Branch/Commit ID: main |
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cpo-pipeline.cwl
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https://github.com/dfornika/cwl-workspace.git
Path: workflows/cpo-pipeline/cpo-pipeline.cwl Branch/Commit ID: master |
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somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: low-vaf |
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revcomp.cwl
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https://github.com/pvanheus/cwltutorial.git
Path: revcomp/revcomp.cwl Branch/Commit ID: master |
