Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph standard_pipeline.cwl

This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/standard_pipeline.cwl

Branch/Commit ID: 0.0.33_dmp
workflow graph CRAM_md5sum_checker_wrapper.cwl

This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/DataBiosphere/toolbox.git

Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl

Branch/Commit ID: 1.30.0
workflow graph md5sum.cwl

https://github.com/denis-yuen/dockstore-workflow-md5sum-unified.git

Path: md5sum/md5sum.cwl

Branch/Commit ID: 1.6.0
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: test
workflow graph ST610109.cwl

https://github.com/Marco-Salvi/dtc61.git

Path: ST610109.cwl

Branch/Commit ID: main
workflow graph bam-bedgraph-bigwig.cwl

https://github.com/Barski-lab/ga4gh_challenge.git

Path: subworkflows/bam-bedgraph-bigwig.cwl

Branch/Commit ID: v0.0.5
workflow graph preprocess.cwl

https://github.com/epigenomics-screw/screw.git

Path: cwl/preprocess.cwl

Branch/Commit ID: dev
workflow graph bacterial_orthology_cond

https://github.com/ncbi/pgap.git

Path: bacterial_orthology/wf_bacterial_orthology_conditional.cwl

Branch/Commit ID: dev
workflow graph pipeline_cavatica.cwl

https://github.com/lux563624348/WDL-HuBMAP-salmon-rnaseq.git

Path: pipeline_cavatica.cwl

Branch/Commit ID: main
workflow graph EMG pipeline v3.0 (paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: 9c57dba