Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 1.0.6 |
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integrity.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: 1.1 |
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test-main.cwl
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https://github.com/kyusque/abmp_log_dump2pieda.git
Path: test-main.cwl Branch/Commit ID: master |
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conpair-master
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/conpair/0.2/conpair-master.cwl Branch/Commit ID: dev |
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ValidateReadout
Validate readout (if applicable for high and low gain chain). |
https://github.com/gammasim/workflows.git
Path: workflows/ValidateReadout.cwl Branch/Commit ID: main |
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pass-unconnected.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/pass-unconnected.cwl Branch/Commit ID: master |
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gathered exome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome_gathered.cwl Branch/Commit ID: master |
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sc_atac_seq_prep_process_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: sc_atac_seq_prep_process_analyze.cwl Branch/Commit ID: 7fed36f |
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wf_split_self_and_idr.cwl
This workflow returns the reproducible number of split peaks given a single bam file and its size-matched input pair. This workflow splits the bam file first, but does not do anything to the input. |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_split_self_and_idr.cwl Branch/Commit ID: master |
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Pipeline for converting dcc files output by GeoMX into sample by gene matrices
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https://github.com/hubmapconsortium/geomx-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 25f3f48 |
