Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph minibam_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: master
workflow graph count-lines16-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines16-wf.cwl

Branch/Commit ID: master
workflow graph workflow1_11.cwl#VDJ_Assemble_and_Annotate_Contigs_TCR.cwl

https://github.com/GeorgeAlehandro/cwl_1_11.git

Path: workflow1_11.cwl

Branch/Commit ID: main

Packed ID: VDJ_Assemble_and_Annotate_Contigs_TCR.cwl
workflow graph SPRM pipeline

https://github.com/hubmapconsortium/sprm.git

Path: pipeline.cwl

Branch/Commit ID: 0cb2efa
workflow graph umi per-lane alignment subworkflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/umi_alignment.cwl

Branch/Commit ID: master
workflow graph Single-cell RNA-Seq Aggregate

Single-cell RNA-Seq Aggregate Aggregates gene expression data from multiple Single-cell RNA-Seq Alignment experiments.

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-rna-aggregate-wf.cwl

Branch/Commit ID: main
workflow graph abundance

abundace profiles from annotated files, for protein and/or rna

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/abundance-clca.workflow.cwl

Branch/Commit ID: master
workflow graph alignment workflow

https://github.com/griffithlab/pmbio.org.git

Path: assets/CWL/workflow.cwl

Branch/Commit ID: master
workflow graph genome-kallisto-index.cwl

Generates a FASTA file with the DNA sequences for all transcripts in a GFF file and builds kallisto index

https://github.com/Barski-lab/workflows.git

Path: tools/genome-kallisto-index.cwl

Branch/Commit ID: master
workflow graph Low vaf Detect Variants workflow for Megan Cooper

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/low_vaf_detect_variants.cwl

Branch/Commit ID: low-vaf