Workflow: func_summaries.cwl

Fetched 2025-02-18 06:01:20 GMT
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Inputs

ID Type Title Doc
cds File
rna File
ko_file String
pfam_annotation File
hmmscan_annotation File
antismash_gene_clusters File (Optional)
interproscan_annotation File

Steps

ID Runs Label Doc
write_summaries
../../tools/summaries/write_summaries.cwl (CommandLineTool)
gather summary file from InterProScan
functional_stats
../../tools/summaries/functional_stats.cwl (CommandLineTool)
generate all functional stats and orf stats

Outputs

ID Type Label Doc
stats Directory
summary_ko File
summary_ips File
summary_pfam File
summary_antismash File (Optional)
Permalink: https://w3id.org/cwl/view/git/4b98d8bf882bc96d924b5d2d4e6d9c188fa7b273/workflows/subworkflows/func_summaries.cwl