- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
cds | File | ||
rna | File | ||
ko_file | String | ||
pfam_annotation | File | ||
hmmscan_annotation | File | ||
antismash_gene_clusters | File (Optional) | ||
interproscan_annotation | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
write_summaries |
../../tools/summaries/write_summaries.cwl
(CommandLineTool)
|
gather summary file from InterProScan | |
functional_stats |
../../tools/summaries/functional_stats.cwl
(CommandLineTool)
|
generate all functional stats and orf stats |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
stats | Directory | ||
summary_ko | File | ||
summary_ips | File | ||
summary_pfam | File | ||
summary_antismash | File (Optional) |
Permalink:
https://w3id.org/cwl/view/git/4b98d8bf882bc96d924b5d2d4e6d9c188fa7b273/workflows/subworkflows/func_summaries.cwl