Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph PGAP Pipeline, simple user input, PGAPX-134

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: test

workflow graph gwas.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/gwas.cwl

Branch/Commit ID: main

workflow graph Single-cell RNA-Seq Analyze

Single-cell RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell RNA-Seq datasets.

https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-rna-analyze-wf.cwl

Branch/Commit ID: main

workflow graph Run genomic CMsearch (5S rRNA)

https://github.com/slottad/pgap.git

Path: bacterial_noncoding/wf_gcmsearch.cwl

Branch/Commit ID: master

workflow graph ST610106.cwl

https://github.com/Marco-Salvi/dtc61.git

Path: ST610106.cwl

Branch/Commit ID: remove-cycles

workflow graph bwa_index

Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_index.cwl

Branch/Commit ID: 1.0.9

workflow graph grep-and-count.cwl

https://github.com/MarkRobbo/workflows.git

Path: workflows/presentation-demo/grep-and-count.cwl

Branch/Commit ID: master

workflow graph gathered exome alignment and somatic variant detection for cle purpose

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome_cle_gathered.cwl

Branch/Commit ID: low-vaf

workflow graph 1st-wf-generated.cwl

https://github.com/MgCoders/of-public.git

Path: 1st-wf-generated.cwl

Branch/Commit ID: master

workflow graph EMG pipeline v3.0 (single end version)

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 9c57dba