Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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PGAP Pipeline, simple user input, PGAPX-134
PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template) |
https://github.com/ncbi/pgap.git
Path: pgap.cwl Branch/Commit ID: test |
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gwas.cwl
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https://github.com/common-workflow-lab/wdl-cwl-translator.git
Path: wdl2cwl/tests/cwl_files/gwas.cwl Branch/Commit ID: main |
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Single-cell RNA-Seq Analyze
Single-cell RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell RNA-Seq datasets. |
https://github.com/Barski-lab/sc-seq-analysis.git
Path: workflows/sc-rna-analyze-wf.cwl Branch/Commit ID: main |
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Run genomic CMsearch (5S rRNA)
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https://github.com/slottad/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: master |
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ST610106.cwl
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https://github.com/Marco-Salvi/dtc61.git
Path: ST610106.cwl Branch/Commit ID: remove-cycles |
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 1.0.9 |
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grep-and-count.cwl
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https://github.com/MarkRobbo/workflows.git
Path: workflows/presentation-demo/grep-and-count.cwl Branch/Commit ID: master |
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gathered exome alignment and somatic variant detection for cle purpose
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: low-vaf |
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1st-wf-generated.cwl
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https://github.com/MgCoders/of-public.git
Path: 1st-wf-generated.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (single end version)
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 9c57dba |
