Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wgs alignment with qc
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: low-vaf |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/bam_filtering.cwl Branch/Commit ID: 3bb03c9b |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: 1.0.9 |
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rna annotation
RNAs - predict, cluster, identify, annotate |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/rna-annotation.workflow.cwl Branch/Commit ID: master |
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TOPMed Alignment
A CWL wrapper of the TopMed alignment workflow described here: https://github.com/statgen/docker-alignment Tool Author: Hyun Min Kang (hmkang@umich.edu) and Adrian Tan (atks@umich.edu) Wrapper Author: Marko Zecevic (marko.zecevic@sbgenomics.com) |
https://github.com/stain/topmed-workflows.git
Path: aligner/sbg-alignment-cwl/topmed-alignment.cwl Branch/Commit ID: no-id |
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animal-genome-assembly.packed.cwl#hybrid_error_correction.cwl
Sub workflow used in the Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak), CWLized by Tazro Ohta (@inutano) |
https://github.com/pitagora-network/DAT2-cwl.git
Path: workflow/animal-genome-assembly/animal-genome-assembly.packed.cwl Branch/Commit ID: main Packed ID: hybrid_error_correction.cwl |
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output-arrays-file-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/output-arrays-file-wf.cwl Branch/Commit ID: master |
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cosifer-workflow.cwl
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https://github.com/inab/ipc_workflows.git
Path: cosifer/cwl/cosifer-workflow.cwl Branch/Commit ID: main |
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wrapped_workflow_example_workflow.cwl
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https://github.com/Aeolic/example-workflow.git
Path: wrapped_workflow_example_workflow.cwl Branch/Commit ID: main |
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03-map-se-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl Branch/Commit ID: v1.0 |
