Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph qiime2 DADA2 detect/correct sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-03-dada2.cwl
workflow graph Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_ab_initio_training.cwl

Branch/Commit ID: dev
workflow graph A workflow that aligns a fasta file and provides statistics on the SAM file

A workflow that aligns a fasta file and provides statistics on the SAM file

 https://github.com/dockstore/bcc2020-training.git

Path: cwl-training/exercise3/solution/align_and_metrics_imports.cwl

Branch/Commit ID: master
workflow graph trimmed_fastq

Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: 1.0.7
workflow graph BuildCembaReferences.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/BuildCembaReferences.cwl

Branch/Commit ID: main
workflow graph per_cluster_workflow.cwl

https://github.com/FarahZKhan/scalability-reproducibility-chapter.git

Path: CWL/per_cluster_workflow.cwl

Branch/Commit ID: master
workflow graph 04-peakcall-se.cwl

ATAC-seq 04 quantification - SE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl

Branch/Commit ID: v1.0.0
workflow graph wgs alignment and germline variant detection

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/germline_wgs.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph wf-loadContents2.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/wf-loadContents2.cwl

Branch/Commit ID: main
workflow graph bsbolt_multilib.cwl

https://github.com/CompEpigen/PipelineOlympics.git

Path: CWL/workflows/BSBolt/bsbolt_multilib.cwl

Branch/Commit ID: main