Workflow: Seed Search Compartments
Fetched 2024-11-23 21:40:01 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/dev/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| asn_cache | Directory | ||
| db_gencode | Integer | ||
| compartments | File | ||
| uniColl_asn_cache | Directory |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gpx_dump |
gpx_qdump.cwl
(CommandLineTool)
|
Seed Search Compartments, gather | |
| gpx_qsubmit |
gpx_qsubmit.cwl
(CommandLineTool)
|
Seed Search Compartments, scatter | |
| tblastn_wnode |
tblastn_wnode.cwl
(CommandLineTool)
|
Seed Search Compartments, execute\" |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| blast_align | File |
Permalink:
https://w3id.org/cwl/view/git/424a01693259a75641dc249d553235aa38a6ce23/protein_alignment/wf_seed.cwl
