Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
CRAM_md5sum_checker_wrapper.cwl
This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/DataBiosphere/topmed-workflows.git
Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl Branch/Commit ID: 1.24.0 |
|
|
|
RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 8515542 |
|
|
|
compile1.cwl#main
|
https://github.com/common-workflow-language/workflows.git
Path: workflows/compile/compile1.cwl Branch/Commit ID: master Packed ID: main |
|
|
|
blast_and_filter_workflow.cwl
|
https://github.com/sapojnik/av_screen_x.git
Path: progs/blast_and_filter_workflow.cwl Branch/Commit ID: main |
|
|
|
stage_data_workflow.cwl
|
https://github.com/nci-gdc/htseq-cwl.git
Path: workflows/subworkflows/stage_data_workflow.cwl Branch/Commit ID: master |
|
|
|
find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
|
|
|
Functional analyis of sequences that match the 16S SSU
|
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 71d9c83 |
|
|
|
ConcordanceCheckerWorkflow.cwl
|
https://github.com/DataBiosphere/topmed-workflows.git
Path: vcf-comparator/ConcordanceCheckerWorkflow.cwl Branch/Commit ID: 1.30.0 |
|
|
|
exomeseq-02-variantdiscovery.cwl
|
https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-02-variantdiscovery.cwl Branch/Commit ID: gatk4-fixes |
|
|
|
qiime2 demux sequences
Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-02-demux-emp-single.cwl Branch/Commit ID: develop |
