Workflow: scatter GATK HaplotypeCaller over intervals

Fetched 2021-06-17 01:18:58 GMT
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Workflow as SVG
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Inputs

ID Type Title Doc
reference String
emit_reference_confidence String
contamination_fraction String (Optional)
intervals 5f38caf1892e19d1b0e8b8f668a62bc7[]
cram File
dbsnp_vcf File (Optional)
gvcf_gq_bands String[]

Steps

ID Runs Label Doc
haplotype_caller
gatk_haplotypecaller.cwl (CommandLineTool)
GATK HaplotypeCaller

Outputs

ID Type Label Doc
gvcf File[]
Permalink: https://w3id.org/cwl/view/git/d1ee6a2a323cee7e4af00c7e0b926c2192038e1d/detect_variants/gatk_haplotypecaller_iterator.cwl