- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
cram | File | ||
dbsnp_vcf | File (Optional) | ||
intervals | 12598db32d8e8c20917a350798ddbd06[] | ||
reference | String | ||
gvcf_gq_bands | String[] | ||
contamination_fraction | String (Optional) | ||
emit_reference_confidence | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
haplotype_caller |
gatk_haplotypecaller.cwl
(CommandLineTool)
|
GATK HaplotypeCaller |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
gvcf | File[] |
Permalink:
https://w3id.org/cwl/view/git/d1ee6a2a323cee7e4af00c7e0b926c2192038e1d/detect_variants/gatk_haplotypecaller_iterator.cwl