Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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ConcordanceCheckerWorkflow.cwl
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https://github.com/DataBiosphere/topmed-workflows.git
Path: vcf-comparator/ConcordanceCheckerWorkflow.cwl Branch/Commit ID: 1.16.0 |
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vecscreen_and_filter_workflow.cwl
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https://github.com/sapojnik/av_screen_x.git
Path: progs/vecscreen_and_filter_workflow.cwl Branch/Commit ID: main |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 2104dc3 |
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fastq_foreign_chromosome_cleanup
This workflow remove foreign chromosome comtamination from blastn TSV files |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Contamination/fastq-foreign-chromosome-cleanup.cwl Branch/Commit ID: master |
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ConcordanceTestWorkflow.cwl
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https://github.com/DataBiosphere/topmed-workflows.git
Path: vcf-comparator/ConcordanceTestWorkflow.cwl Branch/Commit ID: 1.28.0 |
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count-lines11-wf-noET.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines11-wf-noET.cwl Branch/Commit ID: master |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: master |
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chksum_seqval_wf_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.2.1 |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/access-pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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Tumor-Only Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: master |
