Explore Workflows
View already parsed workflows here or click here to add your own
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BD Rhapsody™ WTA Analysis Pipeline
The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
![]() Path: workflow1_11.cwl Branch/Commit ID: main Packed ID: main |
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Per-region pindel
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![]() Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: downsample_and_recall |
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workflow.cwl
This is a sample workflow that downloads several files and prcoesses them |
![]() Path: workflow/cwl/workflow.cwl Branch/Commit ID: master |
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cmsearch-multimodel.cwl
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![]() Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: 5833078 |
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samtools_view_sam2bam
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![]() Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 1.0.9 |
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collate_unique_rRNA_headers.cwl
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![]() Path: tools/collate_unique_rRNA_headers.cwl Branch/Commit ID: 8e196ab |
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collapsed_fastq_to_bam.cwl
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![]() Path: workflows/marianas/collapsed_fastq_to_bam.cwl Branch/Commit ID: master |
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js-expr-req-wf.cwl#wf
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![]() Path: tests/js-expr-req-wf.cwl Branch/Commit ID: master Packed ID: wf |
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topmed-alignment.cwl
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![]() Path: aligner/sbg-alignment-cwl/topmed-alignment.cwl Branch/Commit ID: 4c46a709e7b986a09b9eb27ccdb0540e69e006 |
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record-output-wf.cwl
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![]() Path: tests/record-output-wf.cwl Branch/Commit ID: master |