Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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EMG pipeline v3.0 (single end version)
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![]() Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 0cd2d70 |
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cmsearch-multimodel.cwl
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![]() Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: 5e82174 |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
![]() Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0 |
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01-qc-se.cwl
RNA-seq 01 QC - reads: SE |
![]() Path: v1.0/RNA-seq_pipeline/01-qc-se.cwl Branch/Commit ID: master |
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merge_filter.cwl
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![]() Path: CWL/workflow_modules/merge_filter.cwl Branch/Commit ID: master |
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QIIME2 Step 1
QIIME2 Import and Demux Step 1 |
![]() Path: packed/qiime2-step1-import-demux.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: main |
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wf_trim_partial_and_map_se.cwl
This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment |
![]() Path: cwl/wf_trim_partial_and_map_se.cwl Branch/Commit ID: master |
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functional analysis prediction with InterProScan
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![]() Path: workflows/functional_analysis.cwl Branch/Commit ID: fa86fce |
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pcr-bottleneck-coef.cwl
ChIP-seq - map - PCR Bottleneck Coefficients |
![]() Path: v1.0/map/pcr-bottleneck-coef.cwl Branch/Commit ID: v1.0 |
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LSU-from-tablehits.cwl
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![]() Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: f914942 |