Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph THOR - differential peak calling of ChIP-seq signals with replicates

What is THOR? -------------- THOR is an HMM-based approach to detect and analyze differential peaks in two sets of ChIP-seq data from distinct biological conditions with replicates. THOR performs genomic signal processing, peak calling and p-value calculation in an integrated framework. For more information please refer to: ------------------------------------- Allhoff, M., Sere K., Freitas, J., Zenke, M., Costa, I.G. (2016), Differential Peak Calling of ChIP-seq Signals with Replicates with THOR, Nucleic Acids Research, epub gkw680.

https://github.com/datirium/workflows.git

Path: workflows/rgt-thor.cwl

Branch/Commit ID: 46a077b51619c6a14f85e0aa5260ae8a04426fab

workflow graph wf_loopback.cwl

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/loopback/wf_loopback.cwl

Branch/Commit ID: master

workflow graph LSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/LSU-from-tablehits.cwl

Branch/Commit ID: 930a2cf

workflow graph main-NA24385-sv.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: NA24385-sv/NA24385-sv-workflow/main-NA24385-sv.cwl

Branch/Commit ID: master

workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: f993cad

workflow graph pipeline-fastq2vcf-parallel-bwa.cwl

DNAseq pipeline from fastq to vcf

https://github.com/Sentieon/Sentieon-cwl.git

Path: pipeline/pipeline-fastq2vcf-parallel-bwa.cwl

Branch/Commit ID: master

workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: a8abd0e

workflow graph Trim and reformat reads (single and paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: 71d9c83

workflow graph chksum_xam_to_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_xam_to_interleaved_fq.cwl

Branch/Commit ID: 0.3.0

workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 0cd2d70