This is a name for output files, for example Experiment1_Metrics_Summary.csv. Default if left empty is to name run based on a library. Any non-alpha numeric characters will be changed to a hyphen.

Any number of reads >1 or a fraction between 0 < n < 1 to indicate the percentage of reads to subsample.

Specify the Sample Tag number followed by - (hyphen) and a sample name to appear in the output files. For example: 4-Ramos. Should be alpha numeric, with + - and _ allowed. Any special characters: &, (), [], {}, <>, ?, | will be corrected to underscores.

The VDJ species and chain types. This option should only be set for VDJ experiment.

For use when replicating a previous subsampling run only. Obtain the seed generated from the log file for the SplitFastQ node.

Determine putative cells using only the basic algorithm (minimum second derivative along the cumulative reads curve). The refined algorithm attempts to remove false positives and recover false negatives, but may not be ideal for certain complex mixtures of cell types. Does not apply if Exact Cell Count is set.

Set a specific number (>=1) of cells as putative, based on those with the highest error-corrected read count

Specify the data to be used for putative cell calling. mRNA is the default selected option.

The sample multiplexing kit version. This option should only be set for a multiplexed experiment.

By default, reads aligned to exons and introns are considered and represented in molecule counts. Including intronic reads may increase sensitivity, resulting in an increase in molecule counts and the number of genes per cell for both cellular and nuclei samples. Intronic reads may indicate unspliced mRNAs and are also useful, for example, in the study of nuclei and RNA velocity. When set to true, intronic reads will be excluded.