Workflow: wf_contam_detect.cwl
Fetched 2025-03-16 15:37:35 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pipelines/master/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| query | File | ||
| karyot_type | https://w3id.org/cwl/view/git/7a5fae087e42ec7d2bfdf3f88ba2ea1e8fdc9ddf/contam_filter/typedefs.yaml#KaryotType | ||
| default_fastas | https://w3id.org/cwl/view/git/7a5fae087e42ec7d2bfdf3f88ba2ea1e8fdc9ddf/contam_filter/typedefs.yaml#SettingsType |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| blastit |
wf_blastit.cwl
(Workflow)
|
||
| make_list |
create_blast_list.cwl
(ExpressionTool)
|
||
| vecscreen |
wf_vecscreen.cwl
(Workflow)
|
||
| tar_output |
wf_contam_detect.cwl#tar_output/e26674de-ba43-4234-95a9-1cd148ba347b
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| result | File |
Permalink:
https://w3id.org/cwl/view/git/7a5fae087e42ec7d2bfdf3f88ba2ea1e8fdc9ddf/contam_filter/wf_contam_detect.cwl
