- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/609aead9804a8f31fa9b3dbc7e52105aec487f31/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
lds2 | File | ||
seqids | File | ||
hmm_path | Directory | ||
hmms_tab | File (Optional) | ||
proteins | File | ||
asn_cache | Directory | ||
scatter_gather_nchunks | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
split_jobs |
../split_jobs/split.cwl
(CommandLineTool)
|
cwl split wrapper | |
collect_hmm_results |
../split_jobs/cat_array_of_files.cwl
(CommandLineTool)
|
file concatenation | |
hmmsearch_create_jobs |
../progs/hmmsearch_create_jobs.cwl
(CommandLineTool)
|
hmmsearch_create_jobs | |
hmmsearch_wnode_qdump |
tt_hmmsearch_wnode_plus_qdump.cwl
(Workflow)
|
hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
jobs | File | ||
workdir | Directory | ||
hmm_hits | File |
Permalink:
https://w3id.org/cwl/view/git/609aead9804a8f31fa9b3dbc7e52105aec487f31/task_types/tt_hmmsearch_wnode.cwl