Workflow: workflow.cwl

Fetched 2023-01-11 20:57:44 GMT
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Inputs

ID Type Title Doc
PATH String[]
tree String[]
in_seq Directory
in_dummy File
in_names Directory
in_tracks Directory
in_cds_fasta File
in_gc_bigwig File
in_gaps_bigwig File
in_genomic_gff File
in_tracks_conf File
deepPATH_bigwig String[]
in_genomic_fasta File
in_protein_fasta File[]
deepPATH_analyses String[]
in_trackList_json File
in_assembly_readme File
in_transcript_fasta File
deepPATH_apollo2_data String[]
in_trackList_json_bak File
deepPATH_genomic_fasta String[]
in_genePrediction_readme File

Steps

ID Runs Label Doc
cp_seq
cp_dir.cwl (CommandLineTool)
cp_names
cp_dir.cwl (CommandLineTool)
cp_tracks
cp_dir.cwl (CommandLineTool)
cp_cds_fasta
cp_file_4_annotation.cwl (CommandLineTool)
cp_gc_bigwig
cp_file.cwl (CommandLineTool)
cp_gaps_bigwig
cp_file.cwl (CommandLineTool)
cp_genomic_gff
cp_file_4_annotation.cwl (CommandLineTool)
cp_tracks_conf
cp_file.cwl (CommandLineTool)
cp_genomic_fasta
cp_file.cwl (CommandLineTool)
cp_protein_fasta
cp_file_4_annotation.cwl (CommandLineTool)
cp_trackList_json
cp_file.cwl (CommandLineTool)
cp_assembly_readme
cp_file.cwl (CommandLineTool)
cp_transcript_fasta
cp_file_4_annotation.cwl (CommandLineTool)
cp_trackList_json_bak
cp_file.cwl (CommandLineTool)
cp_genePrediction_readme
cp_file_4_annotation.cwl (CommandLineTool)

Outputs

There are no outputs in this workflow

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Permalink: https://w3id.org/cwl/view/git/45bb8fc5cc5e5fee3f29099469621a53d084757d/flow_dispatch/2other_species/workflow.cwl