Workflow: create_snap_and_analyze.cwl
Fetched 2023-01-04 21:39:12 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| threads | Integer (Optional) | ||
| promoters | File (Optional) | ||
| gene_track | File (Optional) | ||
| size_index | File (Optional) | ||
| tmp_folder | String (Optional) | ||
| genome_name | String (Optional) | ||
| bin_size_list | Integer[] (Optional) | ||
| blacklist_bed | File (Optional) | ||
| alignment_index | File (Optional) | ||
| gene_annotation | File (Optional) | ||
| encode_blacklist | File (Optional) | ||
| preferred_barcodes | File (Optional) | ||
| sequence_directory | Directory | ||
| reference_genome_fasta | File (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| create_and_analyze_snap_file |
steps/snaptools_create_snap_file.cwl
(Workflow)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| bam_file | File[] | ||
| snap_file | File[] | ||
| report_files | 1adad14ac65dcd36ec1c5df74d9e9a0a[] | ||
| snap_qc_file | File[] | ||
| zipped_files | 72a684c75ce5b659954fa7188cc3cd33[] | ||
| fragment_file | File[] | ||
| motif_CSV_files | 3bc9231601e5d4e7d09374f924b19c78[] | ||
| motif_RData_file | File[] | ||
| analysis_BED_files | 299a9b81364b2a09db23beecde3942b5[] | ||
| analysis_CSV_files | 8c2af523ff83b3c2b736c4fa2bf6c7a4[] | ||
| analysis_MTX_files | d2b389bb6680f2cd799492cc710cd87e[] | ||
| analysis_PDF_files | 2195b3c58ef4a91f0e7f381d31ba4554[] | ||
| analysis_TXT_files | 5d8d9675646366a8925010479cf95f41[] | ||
| alignment_qc_report | File[] | ||
| analysis_HDF5_files | f98f3acb9db8a2cba10d926f4cd658e0[] | ||
| analysis_RDS_objects | b03597a7a013707cac129d18fced473d[] |
Permalink:
https://w3id.org/cwl/view/git/6aad6cf080303e682e5f965f86ddd3c6534ad4a3/create_snap_and_analyze.cwl
