- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
threads | Integer (Optional) | ||
processes | Integer (Optional) | ||
promoters | File (Optional) | ||
gene_track | File (Optional) | ||
size_index | File (Optional) | ||
tmp_folder | String (Optional) | ||
genome_name | String (Optional) | ||
input_fastq1 | File | ||
input_fastq2 | File | ||
bin_size_list | Integer[] (Optional) | ||
blacklist_bed | File (Optional) | ||
alignment_index | File (Optional) | ||
gene_annotation | File (Optional) | ||
encode_blacklist | File (Optional) | ||
preferred_barcodes | File (Optional) | ||
input_barcode_fastq | File (Optional) | ||
reference_genome_fasta | File (Optional) |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
snapanalysis_setup_and_analyze |
snapanalysis_setup_and_analyze.cwl
(Workflow)
|
||
snaptools_create_fragment_file |
create_snap_steps/snaptools_create_fragment_file.cwl
(CommandLineTool)
|
snaptools create fragment file |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
bam_file | File | ||
snap_file | File | ||
report_files | File[] | ||
snap_qc_file | File | ||
zipped_files | File[] | ||
fragment_file | File | ||
motif_CSV_files | File[] | ||
motif_RData_file | File | ||
analysis_BED_files | File[] | ||
analysis_CSV_files | File[] | ||
analysis_MTX_files | File[] | ||
analysis_PDF_files | File[] | ||
analysis_TXT_files | File[] | ||
alignment_qc_report | File | ||
analysis_HDF5_files | File[] | ||
analysis_RDS_objects | File[] |
Permalink:
https://w3id.org/cwl/view/git/6aad6cf080303e682e5f965f86ddd3c6534ad4a3/steps/snaptools_create_snap_file.cwl