Workflow: pipeline.cwl
Fetched 2026-05-17 02:53:05 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| rgb | Boolean (Optional) | ||
| processes | Integer | ||
| downsample_type | String (Optional) | ||
| output_filename | String (Optional) | ||
| ometiff_directory | Directory | ||
| invert_geojson_mask | Boolean (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| crop_images |
steps/crop-images.cwl
(CommandLineTool)
|
Crop image to tissue selection, either detected or read from GeoJSON | |
| convert_to_pyramid |
steps/ometiff-to-pyramid.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| n5_dir | Directory[] | ||
| pyramid_dir | Directory[] |
Permalink:
https://w3id.org/cwl/view/git/862cf4196e7cbd274937d0aa0d6f8246ed04c9b5/pipeline.cwl
