digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 278 663 278 663 0 ",
		bb="0,0,663,278",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 215 8 270 567 270 567 215 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 258 0 84 15 -Workflow Inputs ",
			bb="8,215,567,270",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,260.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		processes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 223.5 16.5 242.5 81.5 242.5 81.5 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 49 230.5 0 49 9 -processes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=processes,
			pos="49,233",
			rects="16.5,223.5,81.5,242.5",
			width=0.90278];
		ometiff_directory	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 332.5 223.5 332.5 242.5 433.5 242.5 433.5 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 383 230.5 0 85 17 -ometiff_directory ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ometiff_directory,
			pos="383,233",
			rects="332.5,223.5,433.5,242.5",
			width=1.4028];
		invert_geojson_mask	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 437.5 223.5 437.5 242.5 558.5 242.5 558.5 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 498 230.5 0 105 19 -invert_geojson_mask ",
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			label=invert_geojson_mask,
			pos="498,233",
			rects="437.5,223.5,558.5,242.5",
			width=1.6806];
		rgb	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 86 223.5 86 242.5 118 242.5 118 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 102 230.5 0 16 3 -rgb ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=rgb,
			pos="102,233",
			rects="86,223.5,118,242.5",
			width=0.44444];
		downsample_type	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 122 223.5 122 242.5 228 242.5 228 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 175 230.5 0 90 15 -downsample_type ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=downsample_type,
			pos="175,233",
			rects="122,223.5,228,242.5",
			width=1.4722];
		output_filename	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 232 223.5 232 242.5 328 242.5 328 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 280 230.5 0 80 15 -output_filename ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_filename,
			pos="280,233",
			rects="232,223.5,328,242.5",
			width=1.3333];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 89 8 89 63 232 63 232 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 143 15 0 92 16 -Workflow Outputs ",
			bb="89,8,232,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="143,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		pyramid_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 97.5 35.5 97.5 54.5 172.5 54.5 172.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 135 42.5 0 59 11 -pyramid_dir ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=pyramid_dir,
			pos="135,45",
			rects="97.5,35.5,172.5,54.5",
			width=1.0417];
		n5_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 176.5 35.5 176.5 54.5 223.5 54.5 223.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 200 42.5 0 31 6 -n5_dir ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=n5_dir,
			pos="200,45",
			rects="176.5,35.5,223.5,54.5",
			width=0.65278];
	}
	convert_to_pyramid	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 110 80.5 110 99.5 224 99.5 224 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 167 87.5 0 98 18 -convert_to_pyramid ",
		height=0.27778,
		label=convert_to_pyramid,
		pos="167,90",
		rects="110,80.5,224,99.5",
		width=1.5833];
	processes -> convert_to_pyramid	[_draw_="c 7 -#000000 B 7 48.74 223.87 48.65 208.68 50.3 175.49 65 153 80.92 128.64 110.07 112.35 133.15 102.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 134.04 104.88 139.62 99.99 132.21 100.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 86.5 155.6 0 43 9 -processes ",
		label=processes,
		lp="86.5,157.5",
		pos="e,141.02,99.426 48.744,223.87 48.65,208.68 50.3,175.49 65,153 80.923,128.64 110.07,112.35 133.15,102.6"];
	crop_images	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 307 125.5 307 144.5 663 144.5 663 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 485 132.5 0 340 68 -Crop image to tissue selection, either detected or read from GeoJSON ",
		height=0.27778,
		label="Crop image to tissue selection, either detected or read from GeoJSON",
		pos="485,135",
		rects="307,125.5,663,144.5",
		width=4.9444];
	ometiff_directory -> crop_images	[_draw_="c 7 -#000000 B 10 411.34 223.56 420.47 219.71 430.02 214.33 437 207 449.24 194.15 442.31 184.86 452 170 456.69 162.81 463.03 155.84 \
468.9 150.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 470.45 152.01 473.89 145.44 467.1 148.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 486.5 178.1 0 69 17 -ometiff_directory ",
		label=ometiff_directory,
		lp="486.5,180",
		pos="e,474.99,144.4 411.34,223.56 420.47,219.71 430.02,214.33 437,207 449.24,194.15 442.31,184.86 452,170 456.69,162.81 463.03,155.84 \
468.9,150.1"];
	collect_ometiff_files	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 294.5 170.5 294.5 189.5 409.5 189.5 409.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 352 177.5 0 99 21 -collect_ometiff_files ",
		height=0.27778,
		pos="352,180",
		rects="294.5,170.5,409.5,189.5",
		width=1.5972];
	ometiff_directory -> collect_ometiff_files	[_draw_="c 7 -#000000 B 4 377.88 223.58 373.41 216.23 366.81 205.37 361.4 196.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 363.54 195.27 357.81 190.56 359.35 197.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 401.5 200.6 0 69 17 -ometiff_directory ",
		label=ometiff_directory,
		lp="401.5,202.5",
		pos="e,357.02,189.26 377.88,223.58 373.41,216.23 366.81,205.37 361.4,196.46"];
	invert_geojson_mask -> crop_images	[_draw_="c 7 -#000000 B 7 505.3 223.88 515.1 211.95 530.35 189.02 522 170 518.42 161.85 511.82 154.8 505.17 149.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 506.87 147.48 499.82 145.17 503.89 151.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 567 178.1 0 86 19 -invert_geojson_mask ",
		label=invert_geojson_mask,
		lp="567,180",
		pos="e,498.62,144.25 505.3,223.88 515.1,211.95 530.35,189.02 522,170 518.42,161.85 511.82,154.8 505.17,149.26"];
	rgb -> convert_to_pyramid	[_draw_="c 7 -#000000 B 10 102.06 223.94 102.37 209.42 104.02 178.02 112 153 119.16 130.56 122.6 123.88 140 108 141.5 106.63 143.13 105.3 \
144.82 104.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 145.84 106.3 150.22 100.32 143.06 102.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 119 155.6 0 14 3 -rgb ",
		label=rgb,
		lp="119,157.5",
		pos="e,151.47,99.462 102.06,223.94 102.37,209.42 104.02,178.02 112,153 119.16,130.56 122.6,123.88 140,108 141.5,106.63 143.13,105.3 144.82,\
104.03"];
	downsample_type -> convert_to_pyramid	[_draw_="c 7 -#000000 B 7 167.23 223.79 156.2 211.5 136.5 187.08 129 162 122.68 140.86 138.59 118.8 151.73 104.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 153.18 107 156.41 100.33 149.72 103.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 166.5 155.6 0 75 15 -downsample_type ",
		label=downsample_type,
		lp="166.5,157.5",
		pos="e,157.48,99.257 167.23,223.79 156.2,211.5 136.5,187.08 129,162 122.68,140.86 138.59,118.8 151.73,104.99"];
	output_filename -> convert_to_pyramid	[_draw_="c 7 -#000000 B 7 270.02 223.65 255.49 211.18 228.19 186.55 209 162 195.16 144.29 182.51 121.61 174.78 106.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 177.07 105.79 171.71 100.66 172.7 108.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 242.5 155.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="242.5,157.5",
		pos="e,171.02,99.314 270.02,223.65 255.49,211.18 228.19,186.55 209,162 195.16,144.29 182.51,121.61 174.78,106.71"];
	convert_to_pyramid -> pyramid_dir	[_draw_="c 7 -#000000 B 4 160.83 80.71 156.67 75.12 151.06 67.58 146.13 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 148.2 59.63 142.05 55.48 144.27 62.56 ",
		pos="e,141.15,54.265 160.83,80.709 156.67,75.117 151.06,67.579 146.13,60.957"];
	convert_to_pyramid -> n5_dir	[_draw_="c 7 -#000000 B 4 173.36 80.71 177.65 75.12 183.44 67.58 188.52 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 190.42 62.51 192.74 55.47 186.53 59.53 ",
		pos="e,193.66,54.265 173.36,80.709 177.65,75.117 183.44,67.579 188.52,60.957"];
	crop_images -> convert_to_pyramid	[_draw_="c 7 -#000000 B 4 422.17 125.5 367.25 118.08 287.81 107.34 232.2 99.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 232.59 97.4 225.33 98.89 231.93 102.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377 110.6 0 46 12 -ometiff_file ",
		label=ometiff_file,
		lp="377,112.5",
		pos="e,223.83,98.684 422.17,125.5 367.25,118.08 287.81,107.34 232.2,99.816"];
	collect_ometiff_files -> convert_to_pyramid	[_draw_="c 7 -#000000 B 13 329.54 170.58 314.73 165.19 294.85 158.24 277 153 262.52 148.75 256.82 152.96 244 145 225.77 133.68 230.54 120.35 \
213 108 210.34 106.12 207.44 104.43 204.44 102.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 205.61 100.74 198.22 100.07 203.58 105.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 274.5 133.1 0 61 14 -base_directory ",
		label=base_directory,
		lp="274.5,135",
		pos="e,196.85,99.446 329.54,170.58 314.73,165.19 294.85,158.24 277,153 262.52,148.75 256.82,152.96 244,145 225.77,133.68 230.54,120.35 \
213,108 210.34,106.12 207.44,104.43 204.44,102.9"];
	collect_ometiff_files -> crop_images	[_draw_="c 7 -#000000 B 7 339.76 170.72 333.45 165.45 328.01 158.58 333 153 335.53 150.17 344.5 147.76 356.92 145.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 357.01 148.18 363.57 144.72 356.28 143.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 363.5 155.6 0 61 14 -base_directory ",
		label=base_directory,
		lp="363.5,157.5",
		pos="e,365.06,144.5 339.76,170.72 333.45,165.45 328.01,158.58 333,153 335.53,150.17 344.5,147.76 356.92,145.72"];
	collect_ometiff_files -> crop_images	[_draw_="c 7 -#000000 B 10 373.9 170.52 379.6 168.03 385.64 165.12 391 162 396.76 158.65 396.92 155.74 403 153 408.38 150.57 414.11 148.49 \
419.94 146.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 420.42 149.11 426.49 144.85 419.09 144.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426 155.6 0 46 12 -ometiff_file ",
		label=ometiff_file,
		lp="426,157.5",
		pos="e,427.95,144.44 373.9,170.52 379.6,168.03 385.64,165.12 391,162 396.76,158.65 396.92,155.74 403,153 408.38,150.57 414.11,148.49 \
419.94,146.7"];
}