Workflow: htseq_count_workflow.cwl
Fetched 2024-05-12 22:37:35 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| threads | Integer (Optional) | ||
| bam_uuid | String | ||
| gtf_uuid | String | ||
| job_uuid | String | ||
| upload_bucket | String | ||
| bioclient_config | File | ||
| gene_lengths_uuid | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| run_split_bam |
subworkflows/split_bam_workflow.cwl
(Workflow)
|
||
| run_htseq_workflow |
subworkflows/htseq_workflow.cwl
(Workflow)
|
||
| run_stage_workflow |
subworkflows/stage_data_workflow.cwl
(Workflow)
|
||
| run_upload_workflow |
subworkflows/upload_results_workflow.cwl
(Workflow)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| htseq_fpkm_uuid | String | ||
| htseq_counts_uuid | String | ||
| htseq_fpkm_uq_uuid | String |
Permalink:
https://w3id.org/cwl/view/git/1ba6b619154cf892c45dec3977fbd25153bcebab/workflows/htseq_count_workflow.cwl
