Workflow: htseq_workflow.cwl

Fetched 2022-08-09 19:43:39 GMT
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Inputs

ID Type Title Doc
bam_file File[]
gtf_file File
job_uuid String
gene_lengths File

Steps

ID Runs Label Doc
run_fpkm
../../tools/calculate_fpkm.cwl (CommandLineTool)
run_htseq_counts
../../tools/htseq_count.cwl (CommandLineTool)
run_merge_counts
../../tools/merge_htseq.cwl (CommandLineTool)

Outputs

ID Type Label Doc
htseq_fpkm File
htseq_counts File
htseq_fpkm_uq File
Permalink: https://w3id.org/cwl/view/git/1ba6b619154cf892c45dec3977fbd25153bcebab/workflows/subworkflows/htseq_workflow.cwl