CWL Workflow: final-workflow.cwl

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Inputs

ID	Type	Title	Doc
PATH	String[]
tree	String[]
path_GO	File (Optional)
path_KEGG	File (Optional)
organization	String
managePy_Path	String
url_cds_fasta	String[]
path_cds_fasta	File (Optional)
url_table_file	String[]
deepPATH_bigwig	String[]
scientific_name	String[]
url_genomic_gff	String[]
path_genomic_gff	File (Optional)
url_md5checksums	String[] (Optional)
deepPATH_analyses	String[]
url_genomic_fasta	String[]
url_protein_fasta	String[]
blastdb_Path_stage	String[]
gff_release_number	Integer
hmmerdb_Path_stage	String[]
path_genomic_fasta	File (Optional)
path_protein_fasta	File (Optional)
link_to_publication	String
url_transcript_fasta	String[]
deepPATH_apollo2_data	String[]
path_transcript_fasta	File (Optional)
deepPATH_genomic_fasta	String[]

ID	Runs	Label	Doc
dispatch	flow_dispatch/workflow.cwl (Workflow)
download	flow_download/workflow.cwl (Workflow)
gaps_or_not	gaps_or_not.cwl (Workflow)
md5checksums	flow_md5checksums/workflow.cwl (Workflow)
add_annotation	add-annotation/add_annotation.cwl (CommandLineTool)
create_assembly_readme	flow_create_readme/readme-assembly-workflow.cwl (Workflow)
apollo2_data_processing	flow_apollo2_data_processing/processing/workflow.cwl (Workflow)
create_genePrediction_readme	flow_create_readme/readme-genePrediction-workflow.cwl (Workflow)

There are no outputs in this workflow